Kyogre appeared in its Primal form, swimming through the sea and looking for the megalith. It later encountered Groudon and started to battle it. Both of them gave a though battle and Kyogre used Sheer Cold on Groudon but failed as Groudon broke out of it. Alain then interrupted the battle with his Mega Charizard X and Steven Stone also used his Mega Metagross to help Alain and Charizard out. Kyogre attacked Metagross with Ice Beam but Metagross was able to dodge the attack. It then used several attacks on Metagross but Kyogre was not able to knock Metagross out. Rayquaza later appeared in its Mega form and both Groudon and Kyogre attacked Rayquaza with several attacks. Rayquaza was able to finish both Groudon and Kyogre off with Dragon Ascent and Groudon and Kyogre both returned back into their normal form.
Sawyer remembered how Steven's Metagross battled against Kyogre and Groudon, who wanted to obtain the megalith, which may not have been destroyed after the recent battle.