Mewtwo Returns (Part 2)

Mewtwo Returns (Part 2) (ミュウツー！我ハココニ在リ) is the second part of the special Mewtwo Returns.

Plot
This part begins where the previous one left off. When everyone gets inside Team Rocket's balloon, they see the approaching Combat Unit, and Domino, revealing herself in league with Team Rocket Organization as elite Agent 009 (or, as she calls herself, The Black Tulip), pops their balloon and sends everyone else plummeting onto the mountain while she returns to Giovanni to report on Mewtwo's status. Giovanni's operation to capture Mewtwo begins in earnest, with Ash and his friends and nemeses caught up in the core of it.

Giovanni eventually succeeds in capturing Mewtwo with the threat that the other Pokémon clones would be his to capture and experiment if Mewtwo didn't comply. When Mewtwo complies he steps into a ball Giovanni's 2 robots made and begins getting tortured.

The part ends with Jessie and James trapped in the prison cell, wondering what'll happen if Meowth doesn't come back. They then say "Team Rocket is never blasting off again!", and the part comes to a close on a cliffhanger, as the story still continues.